Table 5_Integrative genomic and transcriptomic insights into the biocontrol activity of Ps

Pseudomonas sp. PF05 genomic and transcriptomic analyses reveal its biocontrol strategy against Fusarium oxysporum is based on metabolic reprogramming and stress tolerance, not just antifungal gene expression. The dataset, authored by Francesca Di Rico and updated in April 2026, compares this strain with a related, less effective one to uncover key molecular determinants. It is a 772.7 KB DOCX file containing integrated analysis results from comparative genomics and transcriptomic profiling.

Use Cases

• Comparative genomics analysis based on gene repertoires for secondary metabolite biosynthesis like phenazine metabolism.
• Transcriptomic profiling to study adaptive responses involving efflux systems and metabolic reprogramming during fungal interaction.
• Identifying regulatory networks and stress tolerance traits that underpin effective biocontrol in Pseudomonas strains.
• Benchmarking strain-specific antifungal activity by comparing genomic potential and transcriptional regulation between related strains.

Strengths

• Integrated analysis combining comparative genomics and transcriptomic profiling.
• Direct comparison between a highly effective biocontrol strain and a related, weakly antagonistic strain.
• Focus on specific molecular pathways like secondary metabolite biosynthesis and metabolic reprogramming.
• Released under a permissive CC-BY-4.0 license for reuse.

Limitations

• Dataset scale is limited to a 772.7 KB DOCX file, suggesting a focused analysis rather than raw sequencing data.
• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment for large-scale computational tasks.

Provenance

Source

figshare

Collection Method

Integrative analysis via comparative genomics and transcriptomic profiling of bacterial strains.

Time Range

Study period not specified; dataset reflects analysis of the referenced strains.

Freshness

Last updated 2026-04-10 05:58:23.

Geography

Geographic origin of the bacterial strains is not specified.