Maybell Banting presents a transcriptomic atlas for Northern Wild Rice (Zizania palustris L.), a crop wild relative of Oryza sativa. The dataset includes functional gene annotations and transcript per million (TPM) expression matrices at transcript and gene levels, spanning 20 tissues across six major developmental stages. The data was last updated on 2026-04-28 and is available under a CC-BY-4.0 license.
Use Cases
- Comparative transcriptomics analysis based on expression matrices across tissues and developmental stages.
- Functional annotation studies based on the provided gene annotations.
- Identification of tissue-specific or stage-specific gene expression patterns in Northern Wild Rice.
- Research into the genetic basis of traits in crop wild relatives based on the transcriptomic atlas.
Strengths
- Covers 20 distinct tissues across six developmental stages, providing a multi-faceted view of gene expression.
- Includes both transcript-level and gene-level expression matrices, offering flexibility for analysis.
- Dataset size is 818.3 MB, indicating a substantial amount of transcriptomic data.
Limitations
- Row count is unknown, which may limit suitability assessment for specific computational tasks.
- Column-level documentation is absent; field semantics must be inferred after download.
Provenance
- Source
- Maybell Banting via figshare
- Collection Method
- Transcriptomic sequencing and analysis, likely from RNA-seq experiments.
- Freshness
- Last updated 2026-04-28 10:02:07; freshness should be verified.
- Geography
- Plant is native to North America; specific sample geography is unknown.