Nathaniel Street published genomic data for Norway spruce and Scots pine on 2026-04 30. The repository contains files for genome assembly, orthogroups, epigenetics, co-expression, and population genetics analyses. The genomes were assembled using PacBio HiFi reads and chromatin contact data, with annotation from RNA-Seq and IsoSeq data.
Use Cases
- Comparative genome analysis based on the assembled Norway spruce and Scots pine genomes.
- Study of chromatin organization based on Micro-C and Hi-C data used for TAD and loop detection.
- Environmental association studies based on the re-sequenced Norway spruce individuals used for GWAS.
- Analysis of gene co-expression networks based on data profiling wood formation in both species.
- Investigation of paralog evolution based on orthogroup analysis for neo- and sub-functionalisation.
Strengths
- Data is associated with a published study and an ENA Umbrella project (PRJEB88492).
- Includes multiple analysis types: genome, orthogroups, epigenetics, co-expression, and population genetics.
- Genomes assembled using long-read PacBio HiFi and chromatin contact data (Micro-C/Hi-C).
- Released under a permissive CC-BY-4.0 license.
Limitations
- Column-level documentation is absent; field semantics must be inferred after download.
- Row count is unknown, which may limit suitability assessment.
- Description metadata is limited; actual data quality requires manual inspection after download.
Provenance
- Source
- figshare, author Nathaniel Street.
- Collection Method
- Genomes assembled from PacBio HiFi reads and chromatin contact data; annotation from RNA-Seq and IsoSeq reads; population data from Illumina re-sequencing.
- Time Range
- null
- Freshness
- Last updated 2026-04-30 07:58:13; freshness should be verified.
- Geography
- null