TMHMM Analysis of Small Secreted Proteins in Microbotryum intermedium

Michael Perlin published a dataset on figshare on June 4, 2026. It contains results from a TMHMM analysis of hypothetical proteins identified as small secreted proteins (SSPs) from the Microbotryum intermedium 1389 BM 12 12 proteome. The final screen filtered out SSPs predicted to contain one or two transmembrane helices.

Use Cases

• Train models to predict small secreted proteins based on sequence analysis pipelines.
• Study the secretome of plant-pathogenic fungi like Microbotryum intermedium.
• Validate transmembrane helix prediction tools like TMHMM and Phobius on fungal proteomes.
• Filter candidate effector proteins for functional characterization in plant-microbe interactions.

Strengths

• The dataset is focused on a specific biological question regarding small secreted proteins and transmembrane helices.
• It is published under a permissive CC-BY-4.0 license, allowing reuse with attribution.
• The file is small (11.7 KB), facilitating quick download and inspection.

Limitations

• Row count is unknown, which may limit suitability assessment for large-scale analysis.
• Column-level documentation is absent; field semantics must be inferred after download.
• The description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare

Collection Method

TMHMM analysis of hypothetical proteins previously filtered by Phobius from a proteome.

Freshness

Last updated 2026-06-04 19:56:10; freshness should be verified.