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This collection provides standardized eddy covariance flux tower measurements of energy and mass exchange, including Net Ecosystem Exchange (NEE), Gross Primary Productivity (GPP), and Ecosystem Respiration (ER), from a variety of Australian ecosystems such as semi-arid woodlands, almond orchards, wetlands, and dry sclerophyll forests. All data is processed into final, gap-filled products using the established PyFluxPro methodology, ensuring methodological consistency crucial for comparative analysis. This enables researchers to study carbon cycling dynamics across different land covers and management practices. The curated set supports the calibration and validation of terrestrial carbon flux models for Australian conditions.