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Disease surveillance, vaccination data, epidemiology, health system capacity, mortality statistics
2,896 datasets
Aggregating 9,604 haemagglutinin sequences of human seasonal influenza viruses from 2000 to 2012, analyzed to compare global circulation patterns. It includes sequences for A/H3N2, A/H1N1 (up to 2009), B/Victoria, and B/Yamagatta virus types. The research was conducted by Trevor Bedford and published in 2020.
Dryad hosts data from a 2012 study of cholera outbreaks in Nepal. The dataset includes 28 Vibrio cholerae isolates from patients and surface water in three districts, analyzed for antimicrobial resistance and genetic markers. Research confirmed the strains were toxigenic, multi-drug resistant, and clonally related to outbreaks in Bangladesh and Haiti.
Laboratory data from a study on the epidemiology of the heritable male-killing symbiont Arsenophonus nasoniae in Nasonia parasitoid wasps. The research tested how host contact behavior, specifically superparasitism rates, drives symbiont spread, host sex ratios, and population extinction. Data supports findings that superparasitism is necessary for symbiont fixation and causes female-biased sex ratios.
Indonesia's economic analysis estimates the fiscal benefits of cervical cancer prevention for a cohort of 10,000,000 12-year-old females. The study calculates Net Present Value for vaccination, screening, and combined strategies, reporting reductions of 87,862 cervical cancer cases and 19,359 deaths.
Experimental data from a grassland system tests the effects of spider predator hunting modes on grasshopper mortality and spatial responses. The study replicated hunting mode by testing two spider species per mode on the same grasshopper prey species. Measurements include grasshopper mortality rates, movement activity, and habitat domain size for both predators and prey.
Data covers oral antibiotic sales in the private sector across 645 municipalities in São Paulo State, Brazil, from 2008 to 2012. The study analyzes consumption levels in defined daily doses per 1,000 inhabitants per day (DID) and their association with socioeconomic determinants. It was created by Breno S. Kliemann to evaluate the impact of a 2010 law restricting over-the-counter antibiotic sales.
Northern European data from a 7-year capture-mark-recapture study tracks Puumala hantavirus infection in cyclic bank vole populations. The dataset monitors seasonal and multiannual infection rate patterns, host density cycles, and transmission dynamics. It was created by Liina Voutilainen to model public health threats from this zoonotic pathogen.
Mexico experienced highly pathogenic avian influenza H7N3 outbreaks from June 2012 to August 2013, primarily in Jalisco and neighboring states. This dataset contains phylogenetic and phylogeographic analyses of full-length virus sequences from North America, modeling traits like location, subtype, host species, and pathogenicity. The research indicates the outbreak originated from the North American low pathogenicity virus pool through reassortment events involving wild birds from different migration flyways.
Aggregating research data investigating the zoonotic origin of the West African Ebola epidemic. It was authored by Almudena Marí Saéz and last updated in June 2020. The data was gathered through wildlife surveys, interviews, and molecular analyses of bat and environmental samples.
This dataset provides simulated data used to test generalizable approaches for anticipating infectious disease emergence. It supports two parallel analytical methods: a set of early-warning signals based on critical slowing down theory and a likelihood-based approach. The data was generated by Tobias S. Brett to validate indicators across a range of different model structures and parameter values.
Nuno R. Faria's research provides statistical analyses of HIV-1 sequence data to reconstruct the virus's early spread in human populations. The study focuses on central Africa, particularly Kinshasa from the 1920s onward, and compares the epidemic histories of HIV-1 group M and group O. It uses phylodynamic methods validated by the earliest known archival HIV-1 sample.
This dataset supports a study presenting a 'forensic genomics' approach to identify causes of mass mortality events, using a harmful algal bloom affecting abalone as a proof of concept. The data was authored by Pierre De Wit and last updated in June 2020.
A dataset showing the amount paid as part of the Covid-19 Small Business Grant to businesses in Leeds. The data was published by the Government Digital Service and last updated on 2020-05-14. It likely contains grant amounts awarded to small retail, hospitality, and leisure businesses based on property rateable values.
Bangladesh-specific COVID-19 tracking data featuring daily and cumulative case and death counts, updated through May 2020. Developed by abd-shoumik, the repository includes historical records and next-day predictions for the early pandemic period.
This repository, curated by lkorczowski and last updated in April 2020, serves as a centralized directory of public datasets, visualization tools, and machine learning resources related to the COVID-19 pandemic. It aggregates links to external data sources and research tools developed during the initial stages of the global health crisis.
Location and facility information for places in New York City providing seasonal flu vaccinations, sourced from data.cityofnewyork.us. The dataset was last updated on February 8, 2020. It includes columns for Facility Name, Address, Phone, operating days, and geographic boundaries.
Profile Mortality Camden & Islington V2.0 FINAL is a public health intelligence profile published by the Government Digital Service on 2020-02-10. It provides an overview of life expectancy and cause of death, broken down by demographic indicators such as age, sex, deprivation, and ward within the London boroughs of Camden and Islington. The data is presented in a PDF format.
A 2020 briefing from the Government Digital Service summarises key findings on health inequality and life expectancy gaps. The analysis focuses on the London boroughs of Camden and Islington. The source material is a PDF slide deck from the eu_open_data platform.
Time series data documents changes in a temperate broadleaved secondary forest in Japan affected by mass oak tree mortality from Japanese oak wilt and foraging pressure from sika deer. The dataset captures temporal shifts in species composition within the canopy and sub-canopy layers and species occurrence in the understory. It was authored by Hiroki Itô and last updated in June 2019.
Locations and contact information for Chicago primary care community health clinics, including federally qualified health centers. The dataset is maintained by the Chicago Department of Public Health and was last updated in April 2019. It is intended as a working document for clinics serving underserved populations.