Two Circos link files enable comparative synteny analysis between the fish species Labeo catla and the reference genomes of Labeo rohita and Danio rerio. The files were generated from sequence homology and alignment of linkage group-anchored scaffolds. This data supports a study on SNP-based high-density genetic linkage map construction and scaffold anchoring in Labeo catla.
Use Cases
- Constructing high-resolution Circos plots to visualize conserved genomic regions between species.
- Performing comparative synteny analysis based on sequence homology and scaffold alignment.
- Anchoring genomic scaffolds to a linkage map for Labeo catla.
- Studying structural genomic relationships between Labeo catla, Labeo rohita, and Danio rerio.
Strengths
- Provides direct inputs for Circos plot generation, a standard visualization tool in genomics.
- Supports a specific, detailed study on linkage map construction and scaffold anchoring.
- Released under a permissive CC-BY-4.0 license, facilitating reuse.
Limitations
- Column names and internal data structure are not described, limiting immediate understanding of file format.
- The dataset consists of only two text files, offering a narrow scope focused on a single comparative analysis.
Provenance
- Source
- bismay sahoo
- Collection Method
- Generated based on sequence homology and alignment of linkage group-anchored scaffolds.
- Time Range
- null
- Freshness
- Last updated March 19, 2026.
- Geography
- null