iPath2 Supplemental Information: Pacific Oyster Stress Response Pathways

iPath2 supplemental information accompanies a 2014 manuscript by Emma Timmins-Schiffman et al. on ocean acidification impacts on the Pacific oyster. The files include a PDF figure showing differentially expressed proteins and pathways under high pCO2 and mechanical stress conditions. The package also contains instructions for uploading input files into the iPath2 tool to interact with the data.

Use Cases

• Visualizing differentially expressed protein pathways under high pCO2 conditions based on the described figure.
• Comparing stress response pathways between mechanical stimulation and combined stressors based on the supplemental data.
• Recreating the pathway analysis from the paper using the provided iPath2 input instructions.

Strengths

• Data is directly linked to a peer-reviewed 2014 scientific manuscript.
• Includes specific instructions for using the iPath2 tool with the provided data.

Limitations

• Row count and column-level documentation are absent; field semantics must be inferred after download.
• Last update date is unknown; freshness unverified.

Provenance

Source

Emma Timmins‐Schiffman

Collection Method

Derived from research described in the associated 2014 manuscript.

Geography

Likely relates to Pacific oysters, but specific geography is not stated.