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Genomics & Bioinformatics

DNA/RNA sequences, gene expression, protein structures, metagenomics, single-cell sequencing

22,522 datasets

PANDIA: Out-of-Distribution Validation for Infant Pain Assessment

2,847 infant records across four datasets were used to validate the PANDIA multimodal AI system for pain assessment in neonates aged 0–3 months. The system, developed by Oussama El Othmani and published on figshare in May 2026, achieved 87.3% accuracy and a 92.1% clinician acceptance rate for explanations. All code, trained models, and preprocessing pipelines are publicly available on GitHub.

TabularExcelInfant Pain AssessmentMultimodal DataNeonatal CareBenchmarkHealthcareComputer VisionClinical Ai+1

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Genomics & Bioinformatics

PANDIA: Infant Pain Assessment Data for AI Model Evaluation

2,847 infants across four datasets were used to evaluate the PANDIA AI system for pain assessment in neonates aged 0–3 months. The dataset, associated with a paper by Oussama El Othmani, was last updated on 2026-05-26. All code, trained models, and preprocessing pipelines are publicly available via GitHub.

TabularExcelInfant Pain AssessmentMultimodal AiNeonatal CareBenchmarkHealthcareComputer VisionClinical Data+1

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Genomics & Bioinformatics

Menstrual Hygiene Practices Survey in Achham District Nepal After Chhaugoth Demolition

385 girls and women from Chaurpati Rural Municipality, Achham district, Nepal were surveyed in a cross-sectional quantitative study. The dataset likely contains responses on menstrual hygiene management practices following a government demolition campaign targeting traditional seclusion huts (Chhaugoths). The data was collected via individual interviews using KOBO toolbox and analyzed with SPSS.

TabularExcelMenstrual HygieneSurvey DataSocial PracticesHealthcareNepalFinancePublic Health+1

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Genomics & Bioinformatics

Genomic Prediction Accuracy for Milk Production Traits in Mehsana Buffalo

Mayank R. Patel's dataset compares the accuracy of pedigree-based and genomic prediction models for milk production traits in Mehsana buffalo. It includes phenotype records from over 10,500 buffaloes and genotype data from 3,887 buffaloes using a 54K SNP array. The results show an 11.37% average improvement in prediction accuracy using the ssGBLUP model.

TabularGenomic predictionMilk Production TraitsDairy BuffaloBenchmarkHealthcareAnimal breeding+1

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Genomics & Bioinformatics

Atezolizumab Plus Bevacizumab Versus Lenvatinib for HCC Stratified by CRAFITY Score

994 patients with unresectable hepatocellular carcinoma were analyzed in a retrospective international multicenter study from September 2017 to March 2024. The dataset compares progression-free and overall survival between two first-line treatments, atezolizumab plus bevacizumab and lenvatinib, stratified by the baseline CRAFITY score. The study was published on figshare by figshare admin karger under a CC-BY-4.0 license.

TabularOncologyBenchmarkClinical TrialBiomarkerHepatocellular CarcinomaRetrospective Study+1

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Genomics & Bioinformatics

Epigenetic reprogramming of tissue-resident memory T cells in chronic inflammatory disorde

124 patients with rheumatoid arthritis, inflammatory bowel disease, or psoriasis and 35 healthy controls contributed samples for this integrative multi-omics atlas. The dataset includes results from scATAC-seq, ChIP-seq, whole-genome bisulfite sequencing, and scRNA-seq, identifying 847 differentially methylated regions and 1,239 altered chromatin accessibility peaks. Chen Ling published the dataset on figshare in 2026, revealing tissue-specific epigenetic vulnerabilities and potential therapeutic targets like DNMT1 and EZH2.

TabularEpigeneticsMulti OmicsT CellsBiomarkersHealthcareChronic Inflammation+1

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Genomics & Bioinformatics

Longitudinal Human Milk Oligosaccharide Profiles in Japanese Mothers

The Chiba Study of Mother and Child Health (C-MACH) collected 570 human milk samples from 270 Japanese mothers at colostrum, 1 month, and 4 months postpartum. Naoko Higuchi quantified 15 major human milk oligosaccharides (HMOs) and classified mothers into four Secretor/Lewis phenotype groups. The dataset, last updated in 2026, captures longitudinal HMO concentration changes and exploratory associations with maternal and infant characteristics.

TabularTime Series🇯🇵 JapanExcelMaternal HealthHuman Milk OligosaccharidesHealthcareLongitudinal StudyInfant Nutrition+1

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Genomics & Bioinformatics

Multi-layered Functional Genomics Prioritizes Candidate Genes for Ankylosing Spondylitis

30 genome-wide significant loci and 64 prioritized candidate genes from a GWAS meta-analysis of 7,551 ankylosing spondylitis cases and 1,258,581 controls. The dataset, created by Fanyu Meng and last updated in June 2026, integrates results from causal transcriptome-wide association studies, fine-mapping, and in-silico perturbation analyses. It includes cross-trait genetic correlation results and functional validation data from siRNA knockdown experiments.

TabularExcelFunctional GenomicsGenetic PrioritizationAnkylosing SpondylitisHealthcareLarge ScaleImmune DiseaseGenome-wide association study+1

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Genomics & Bioinformatics

Davis Logic V2: Bare-Metal Microcontroller Firmware Configuration

A 4.9 KB dataset from 2026 by independent systems architect Jamie Davis. It contains the low-level configuration files needed to compile and run the Davis Logic V2 architecture on ARM Cortex-M or RISC-V microcontrollers. The setup enforces a static memory footprint to eliminate runtime memory faults for critical applications.

TextGeospatialLinker ScriptHealthcareMicrocontrollerReal TimeFirmwareEmbedded Systems+1

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Genomics & Bioinformatics

Supplementary file 1_Clinical characteristics of hypoglossal nerve palsy secondary to inte

Jee Ho Kang's systematic review, registered in PROSPERO, characterizes hypoglossal nerve palsy secondary to internal carotid artery dissection. The analysis includes 73 studies covering 87 patients, with a mean age of 48.5 years. The review was last updated on June 2, 2026, and is available as a 49.6 KB DOCX file.

TextSystematic ReviewClinical ReviewHealthcareMedical ResearchCarotid Artery DissectionLarge ScaleHypoglossal Nerve Palsy+1

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Genomics & Bioinformatics

Supplementary file 1_Vitamin D status and Helicobacter pylori infection: clinical associat

A 2026 cross-sectional study of 502 Lebanese adults (323 females, 179 males) by Said El Shamieh, investigating associations between vitamin D deficiency and Helicobacter pylori infection. An exploratory untargeted metabolomics sub-study of 50 participants identified lipid pathway differences, including sphingolipid and glycerophospholipid metabolism.

TabularTime SeriesLipid PathwaysHelicobacter pyloriHealthcareVitamin DClinical Study+1

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Genomics & Bioinformatics

Fungal Pathogen Spectrum Across Clinical Specimens from a Wuhan Hospital, 2022-2024

A retrospective analysis of 11,161 metagenomic next-generation sequencing reports from clinical specimens collected at Renmin Hospital of Wuhan University between March 2022 and August 2024. The study characterizes fungal detection rates across specimen types and analyzes patient demographic risk factors. The dataset was authored by Shuo Zhang and shared under a CC-BY-4.0 license.

TabularFungal PathogensClinical MetagenomicsInfectious DiseaseRetrospective AnalysisHealthcareLarge ScaleMngs+1

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Genomics & Bioinformatics

Table 1_Integrative plasma proteomics and myeloid- interferon profiling reveal an AI-valid

16 plasma samples from an Indian cohort were profiled using LC-MS/MS proteomics and Olink cytokine assays to distinguish Systemic Lupus Erythematosus (SLE) flare from remission states. The dataset includes a 5-protein biosignature and was used to train a Random Forest classifier achieving a mean AUROC of 0.96. Data are available via ProteomeXchange with identifier PXD075349 and were last updated on 2026-06-03.

TabularMachine LearningAutoimmune DiseaseHealthcareBiomarker DiscoveryClinical ResearchProteomics+1

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Genomics & Bioinformatics

Genetic Insights on ADRB1 and ADRB2 Targets for Clear Cell Renal Cell Carcinoma

Finnish cohorts of 752,817 and 315,137 individuals were used in a Mendelian randomization study to investigate the association between antihypertensive drug targets and clear cell renal cell carcinoma (CCRCC) risk. The dataset, authored by Honghui Zhu and last updated in June 2026, contains summary statistics from genome-wide association studies (GWAS) and colocalization analyses. It identifies ADRB1 and ADRB2 as potential genetic targets associated with increased CCRCC risk.

TabularMendelian RandomizationGenetic AssociationDrug TargetRenal Cell CarcinomaGwas+1

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Genomics & Bioinformatics

Genetic Insights: ADRB1 as a Potential Target for Clear Cell Renal Cell Carcinoma

752,817 and 315,137 individuals from Finnish GWAS cohorts were used in discovery and validation analyses to investigate the relationship between antihypertensive drug targets and clear cell renal cell carcinoma (CCRCC) risk. The dataset, authored by Honghui Zhu and last updated in June 2026, contains results from summary-data-based Mendelian randomization and colocalization analyses. It identifies ADRB1 and ADRB2 as targets associated with CCRCC risk and includes prognostic survival analysis findings.

TabularMendelian RandomizationGenetic InsightsDrug TargetRenal Cell CarcinomaGwas+1

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Genomics & Bioinformatics

Population Genomic Data for Shy and White-capped Albatrosses from 6 Colonies

90 DNA samples from shy albatross (Thalassarche cauta) and white-capped albatross (T. steadi) across 6 breeding colonies were analyzed using DArTseq to generate SNP genotypes. The dataset includes raw sequence data, analyzed data, and workflow details, funded by Australia's contribution to the Agreement on the Conservation of Albatrosses and Petrels. Analyses were supported by Galaxy Australia and the Nectar Research Cloud.

TextTabularDArTseqHealthcarePopulation GenomicsAlbatrossWildlife ConservationSnp GenotypingSynthetic+1

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Genomics & Bioinformatics

RV Investigator Voyage IN2018_V04 EM710 MKII Multibeam Echosounder Data

September to October 2018 multibeam echosounder data collected by the RV Investigator voyage IN2018_V04. The dataset contains 11.1 GB of raw data across 23 files, capturing seafloor bathymetry, backscatter, and watercolumn backscatter in the southern extension of the East Australian Current. Data is managed by the Australian Ocean Data Network and includes processed grids in GeoTIFF format.

AudioGeospatialMultibeam EchosounderOceanographyMarine ScienceBathymetry+1

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Genomics & Bioinformatics

High-Density SNP Markers for Tropical Maize Inbred Lines

11,203 high-quality SNP markers were retained from an initial set of 31,316 after stringent quality control. The dataset, created by Worknesh Gebre and last updated in May 2026, provides genome-wide coverage for tropical highland maize germplasm. It includes genotype calls and positional information for downstream genetic analyses.

TabularExcelMaizePlant breedingHealthcareGenomicsPopulation GeneticsSnp MarkersSynthetic+1

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Genomics & Bioinformatics

Antarctic Whale Call Recordings and Annotations from Casey Station 2019

Approximately 200 hours of underwater acoustic recordings collected at Casey Station, East Antarctica, between December 2018 and December 2019. The dataset includes time-frequency annotations for Antarctic blue and fin whale calls made by three independent human analysts and automated detectors. It supports a multi-observer capture-recapture analysis for bioacoustic call density estimation.

TabularAudioTime SeriesAntarcticBioacousticsMarine mammalsPassive Acoustic Monitoring+1

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Genomics & Bioinformatics

Sponge Larval Settlement and Gene Expression Under Condensate Oil Exposure

Sponge larval settlement data, differential gene expression data, and microbial amplicon sequence variant data from an experiment on Phyllospongia foliascens. Larvae were exposed to six dilutions of a water accommodated fraction of partially weathered condensate oil for 24 hours. The data is associated with a 2024 research publication and raw sequencing data is available in the NCBI Sequence Read Archive.

TabularCSVTextExcelGene ExpressionSponge LarvaeMicrobial EcologyOil ToxicityMarine Biology+1

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Genomics & Bioinformatics Datasets | DataSalon