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Genomics & Bioinformatics

DNA/RNA sequences, gene expression, protein structures, metagenomics, single-cell sequencing

27,565 datasets

Hypsibius Dujardini: Tardigrade Genome Assembly and Annotation

The Genome Of The Tardigrade Hypsibius Dujardini accompanies a bioRxiv preprint from the University of Edinburgh. It includes the Edinburgh genome assembly version 2.3, spanning 140 megabases with median coverage of 86X, and gene model annotations from Augustus and MAKER. The dataset contains assembly files, gene prediction files in GFF and FASTA formats, and blobDB JSON files for contamination analysis.

TextGenome AssemblyBioinformaticsGenomicsTardigradeSynthetic+1

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Genomics & Bioinformatics

Histone Modification Quantification in Human TK6 Cells via LC-MS/MS

A new liquid chromatography-coupled tandem mass spectrometry method quantified N⁶-methyl-, -acetyl-, and -formyl-lysine modifications on histone proteins from human TK6 cells. The study reports N⁶-formyllysine levels of 1–4 modifications per 10⁴ lysines, contrasting with acetylation and methylation levels ranging from 1.5 to 1400 per 10⁴ lysines. The research was conducted by Bahar Edrissi of the Massachusetts Institute of Technology.

TabularEpigeneticsMass SpectrometryFormaldehydeProteomicsHistone Modifications+1

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Genomics & Bioinformatics

Building Footprints Across Chad from OpenStreetMap

Chad's building footprints, tagged from residential homes to hospitals, schools, and places of worship. The data is sourced from OpenStreetMap, a free collaborative world map, and was last updated on June 22, 2026. Coverage reflects where volunteer mappers have been active, with urban areas typically well-represented.

GeospatialJSONOpenstreetmapUrban PlanningInfrastructureBuilding FootprintsChad+1

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Genomics & Bioinformatics

Syrian Building Footprints from OpenStreetMap for Urban Analysis

OpenStreetMap-derived building footprints across Syria, tagged for residential, hospital, school, and place of worship uses. The dataset is provided by the Humanitarian OpenStreetMap Team and was last updated on 2026-06-22. Coverage reflects volunteer mapper activity, with urban areas typically well-represented and remote areas potentially sparse.

GeospatialJSONFacilities InfrastructureGeodataOpenstreetmapInfrastructureBuilding FootprintsHumanitarian+1

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Genomics & Bioinformatics

Building Footprints Across South Sudan from OpenStreetMap

South Sudan building footprints tagged from OpenStreetMap, including residential, hospital, school, and place of worship features. The data is sourced from volunteer mappers and is useful for population estimation, damage assessment, and urban planning. It was last updated on 2026-06-22 by the Humanitarian OpenStreetMap Team (HOT).

GeospatialJSONFacilities InfrastructureGeodataOpenstreetmapSouth SudanUrban PlanningInfrastructureBuilding Footprints+1

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Genomics & Bioinformatics

Building Footprints of Somalia from OpenStreetMap

OpenStreetMap building footprints across Somalia, tagged for residential, commercial, and public uses. Coverage reflects volunteer mapper activity, with urban areas likely well-represented and remote areas potentially sparse. The Humanitarian OpenStreetMap Team maintains this data, last updated on 2026-06-22.

GeospatialJSONFacilities InfrastructureGeodataOpenstreetmapSomaliaUrban PlanningInfrastructureBuilding Footprints+1

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Genomics & Bioinformatics

UK Private Sector Vacant Dwellings, Historical Housing Strategy Data

No longer collected. This dataset contains historical statistics on total private sector vacant dwellings, compiled as part of the Housing Strategy Statistical Appendix (HSSA) and Business Plan Statistical Appendix (BPSA). It was produced by the UK Ministry of Housing, Communities and Local Government and has been replaced by the Local Authority Housing Statistics.

TabularExcelUk StatisticsPrivate SectorHousingVacancy+1

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Genomics & Bioinformatics

SOFS: Southern Ocean Surface Properties from a Deep Water Mooring

Hourly averages of sea surface observations from the Southern Ocean Flux Station mooring, delivered in near real-time. The mooring, located approximately 350 nautical miles south-west of Tasmania, measures meteorological parameters, radiation, and water properties to study heat and carbon exchange. It was first deployed at 46.7°S, 142°E in March 2010.

Time SeriesGeospatialClimate ScienceOceanographySouthern OceanMeteorology+1

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Genomics & Bioinformatics

Scottish Community Payback Orders Commenced Monthly from 2011

Monthly figures on community payback orders issued by Scottish courts provide early information on sentencing trends. This temporary data collection is published by the Scottish Government as Official Statistics. The information will be collected annually from local authorities starting from the 2011-12 period.

TabularTime SeriesMonthly StatisticsScotlandCriminal JusticeCourt Orders+1

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Genomics & Bioinformatics

Water Body RNAGS Anglian GW: Pressures Preventing Good Water Status

Environment Agency data identifies pressures preventing water bodies in the Anglian GW catchment from achieving good status. Each pressure is assigned a level of certainty as suspected, probable, or confirmed. This retired dataset supports Water Framework Directive river basin management plans and is available interactively online.

TabularGeospatialEnvironmental PressuresCatchment ManagementWater QualityRegulatory Compliance+1

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Genomics & Bioinformatics

Dutch Neighborhood Mediation Program Case Files from 2006-2008

Elze Gooitzen Ufkes from Yale University coded 261 case files of neighbor conflicts reported to a Dutch neighborhood mediation program between 2006 and 2008. The data was used to analyze the role of conflict asymmetry in mediation processes. It examines the entire process from intake to follow-up, not just cases where mediation sessions occurred.

TabularNeighborhood ConflictsPsychologyMediationSocial ScienceConflict Resolution+1

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Genomics & Bioinformatics

School Building Inventory for Central Sulawesi, Indonesia with Earthquake Damage Data

An inventory of 2536 school buildings in Central Sulawesi, Indonesia, developed by Eyitayo A. Opabola of University College London. The region was affected by the 2018 Palu earthquake, which damaged at least 1299 schools. The data includes building location, structural characteristics, vulnerabilities, and post-earthquake condition.

TabularGeospatialDisaster RiskSchool Building InventoryEarthquakeStructural AssessmentSchool BuildingsDisaster Risk ManagementEarthquake Damage+1

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Genomics & Bioinformatics

Antarctic Circumnavigation Expedition Wind Velocity Data, 2016-2017

The Antarctic Circumnavigation Expedition (ACE) 2016/2017 collected one-minute average horizontal wind velocity data from legs 0 to 4. The data has been filtered for spurious observations and true wind correction was redone using quality-checked ship track velocity. This dataset, authored by Sebastian Landwehr of École Polytechnique Fédérale de Lausanne, is available under a Creative Commons Attribution 4.0 International License.

TabularTime SeriesOceanographic dataMeteorologyAntarctic ExpeditionWind Velocity+1

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Genomics & Bioinformatics

Thermomechanical Properties of Honeycomb Lattices from Internal-Coordinates Potentials

An open-source implementation of the Gartstein internal-coordinate potential with 13 parameters tuned on first-principles calculations for graphene. The potential, developed by Francesco Libbi at École Polytechnique Fédérale de Lausanne, can describe vibrational properties of graphene, carbon nanotubes of any diameter and chirality, and monolayer boron-nitride. The entry includes examples of phonon calculations for these systems.

TabularAudioGeospatialComputational PhysicsHoneycomb MaterialsPhonon DispersionsBenchmarkThermomechanical PropertiesLattice Dynamics+1

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Genomics & Bioinformatics

ACE Expedition: Corrected Wind Velocity from Antarctic Circumnavigation

Five-minute averaged horizontal wind velocity data from the Antarctic Circumnavigation Expedition (ACE) 2016/2017 legs 0 to 4 has been corrected for air-flow distortion. The dataset combines port and starboard anemometer measurements via vector averaging and estimates ten-meter neutral wind speed using ERA-5 surface heat fluxes and the COARE 3.5 drag coefficient. It provides a continuous, high-resolution record of wind speed and direction along the ship's track.

TabularTime SeriesAtmospheric ScienceAntarctic ExpeditionWind VelocityPolar Research+1

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Genomics & Bioinformatics

Q-SCAN: Whole Genome Association Study Data for Signal Region Detection

A method and likely associated data for detecting signal regions in whole genome association studies, developed by Zilin Li of Harvard University. The proposed Q-SCAN statistic scans the genome continuously to detect regions associated with disease outcomes, accounting for genetic variant correlation and allowing for mixed effect directions. The method was evaluated using simulation studies and applied to WGS data from the Atherosclerosis Risk in Communities study.

TabularStatistical GeneticsWhole Genome SequencingSignal Region DetectionHealthcareLarge ScaleGenome-wide association study+1

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Genomics & Bioinformatics

NESP TWQ Project 1.3 - A validation of coral geochemical records to reconstruct suspended

A 2015-2016 project from the Australian Ocean Data Network validates coral geochemical records as proxies for suspended sediment loads. The project compares trace element ratios from 2012 coral cores with measured sediment and nutrient loads from the Burdekin River. This work addresses a lack of replication for records widely cited as evidence of increased sediment delivery since the 1850s.

TabularTime SeriesGreat Barrier ReefCoral GeochemistryEnvironmental ValidationSediment Load+1

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Genomics & Bioinformatics

Simulated Brainweb PET/MR Data for Denoising and Deblurring

Georg Schramm from Stanford University provides a dataset of 20 simulated subjects based on normal anatomical models from the BrainWeb phantom. Each subject includes three simulated PET contrast images, an attenuation image, and a high-resolution T1 MR scan, all with a shape of (220,220,184) and 1mm isotropic voxel size in NIfTI format. The anatomical models and T1 scans used to create the ground truth PET images originate from the BrainWeb: Simulated Brain Database.

ImageBrain PhantomMedical ImagingBenchmarkHealthcarePet MrComputer VisionNeuroimagingSimulated DataSynthetic DataSynthetic+1

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Genomics & Bioinformatics

Compliance with Direct Requests for Help: A Series of 6 Behavioral Studies

A series of 6 behavioral studies led by Francis J. Flynn of Stanford University tested whether people underestimate others' likelihood of complying with direct requests for help. The first three studies found underestimations of up to 50% across experimental and natural field settings. Subsequent studies explored the source of this bias, finding help seekers undervalued the social costs of refusal.

TabularBehavioral ExperimentsHelp SeekingSocial PsychologyCompliance Bias+1

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Genomics & Bioinformatics

Subglacial Topography Training Images: 166 Elevation Maps at 500m Resolution

Emma MacKie of Stanford University provides a database of 166 topographic training images for subglacial terrain. The data is a 40,000 x 166 matrix, where each column reshapes to a 200x200 pixel image representing a 100x100 km area with a 500-meter resolution. Elevation data originates from the ArcticDEM and IBCSO bathymetric compilations, as cited in Yin et al. (2022).

GeospatialAntarctic GeologyComputer VisionElevation DataSubglacial TopographyGeospatial Training+1

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