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DNA/RNA sequences, gene expression, protein structures, metagenomics, single-cell sequencing
27,655 datasets
385 girls and women from Chaurpati Rural Municipality, Achham district, Nepal were surveyed in a cross-sectional quantitative study. The dataset likely contains responses on menstrual hygiene management practices following a government demolition campaign targeting traditional seclusion huts (Chhaugoths). The data was collected via individual interviews using KOBO toolbox and analyzed with SPSS.
Transcriptomic profiles from 38 ischemic stroke patients and 18 controls, analyzed at 0-24 h, 24-48 h, and >48 h following stroke. The dataset includes RNAseq data from peripheral monocytes, neutrophils, and whole blood, published by researchers from the University of California, Davis in 2023. It was created to dissect temporal dynamics of immune and clotting responses after acute brain injury.
PsPM-HRA1 includes skin conductance response measurements, stimulus information, and behavioral responses from 20 healthy participants. The dataset was collected by Dominik R. Bach at University College London for a classical discriminant delay fear conditioning task. Participants were 10 males and 10 females aged 22.2±4.0 years.
93 Swiss catchments have daily runoff simulations from 1981 to 2099 under three RCP scenarios. The dataset was generated by researchers at the University of Bern using the PREVAH hydrological model and published in 2021. It includes daily, monthly, seasonal, and yearly aggregated data from multiple GCM-RCM chains for each scenario.
STalign alignment results for spatial transcriptomics data from mouse brain sections. The data includes cell positions and gene counts from aligning MERFISH and Visium datasets, as well as alignments to the 3D Allen Brain Atlas common coordinate framework. Kalen Clifton of Johns Hopkins University developed the STalign Python toolkit used to generate these alignments.
Philip S. Salmon from the University of Bath published data sets used to prepare Figures 1-7 in a Journal of Chemical Physics article. The data sets refer to the measured or modelled structure of As-Se glasses with compositions at or near to As_{0.30}Se_{0.70}, As_{0.35}Se_{0.65} and As_{0.40}Se_{0.60}. The data includes total structure factors F(k), total pair-distribution functions G(r), and difference functions Delta F_{gamma}(k) and Delta G_{gamma}(r).
Adrián Jinich from Cornell University compiled sequence, structure, and substrate data for 358 short-chain dehydrogenase/reductases (SDRs) and 953 S-adenosylmethionine dependent methyltransferases (SAM-MTases). Protein sequences were sourced from UniProtKB with an annotation score above 4-out-of-5, and three-dimensional structures were predicted using AlphaFold2 via ColabFold. Substrate classification labels were derived from UniProtKB annotations using both automated clustering based on molecular fingerprints and manual classification tasks.
127 journals from the highest rank category of the Finnish Publication Forum classification in computer science, physics, and electronic engineering were analyzed for their self-archiving policies. The data, extracted in August 2017 by AM Rousi of Aalto University, categorizes journals by gold or hybrid models and applies Laakso's publisher policy coding framework to green open access rules. It includes publisher identification and notes the shortest applicable embargo period for institutional or subject repositories.
The Australian Ocean Data Network hosts a dataset investigating seabed and suspended sediment composition in north and central Torres Strait, Australia. The data was collected to examine links between sediment properties and widespread seagrass dieback. It includes sedimentological and geochemical properties, such as Cu/Al ratios, from sites near Saibai and Turnagain Islands.
C. A. Frederick from the Massachusetts Institute of Technology solved the crystal structure of the methylated dodecamer d(CGCGAm6ATTCGCG). The structure, determined at 2.0 Angstroms resolution, contains the EcoRI recognition sequence and is compared to its nonmethylated counterpart. This data provides atomic-level insights into how methylation affects DNA conformation and protein-DNA interactions.
1,619 journals were surveyed for a large-scale study on open access journals free for readers and authors. The inventory, a snapshot from March 2021, includes 1,048 journals not listed in the Directory of Open Access Journals. This data was compiled by a consortium of 10 organizations for cOAlition S.
A structural biology dataset from Tsinghua University, authored by Lijuan Yan, detailing the crosslinked complex of the ISWI chromatin remodeler bound to a nucleosome in the ADP state. The data reveals local DNA distortion and translocation mechanisms induced by ISW1, which appear identical to those of the Snf2 remodeler, suggesting a common mechanism. The histone core remains largely unperturbed, and crosslinking did not inhibit the activity of yeast ISW1 or its human homolog.
A 2.6-A resolution x-ray crystal structure of pea lectin in complex with a trimannosyl core oligosaccharide, solved by molecular replacement. The structure was refined with an R factor of 0.183 for data between 8.0 and 2.6 A resolution and an average atomic temperature factor of 26.1 A2. The dataset was produced by James M. Rini from the University of Toronto.
Research by Joshua W. Modell at MIT identifies a second, SOS-independent cell division inhibitor, DidA, in Caulobacter crescentus. The study describes how DidA and SidA jointly delay division after DNA damage, with lethal consequences if both are absent. Data likely includes experimental results on protein interactions and genetic mutations affecting the FtsW/I/N complex.
Complete genome sequences of two Dehalococcoides strains, VS and BAV1, which respire the carcinogen vinyl chloride. The data includes comparative analysis with two previously sequenced genomes, revealing high plasticity regions containing genomic islands and up to 36 reductive dehalogenase genes per genome. The dataset was produced by Paul J. McMurdie of Stanford University.
Australian Ocean Data Network provides a hydrogeological inventory for the Carnarvon Basin, a large sedimentary basin stretching over 1,000 km along Western Australia's coast. The dataset groups descriptive attributes into themes including location, demographics, geology, hydrogeology, groundwater management, and land use. It covers a geologically complex region with significant hydrocarbon resources, where exploration drilling has occurred since 1953.
The International Seabed Geomorphology Mapping Working Group's Seabed Geomorphology Classifier (ISGM-SGC) is a standardized tool for classifying seabed features. It was developed by geoscience agencies from the United Kingdom, Norway, Ireland, and Australia. The tool assigns five levels of geomorphology classification attributes and 16 additional attributes for describing geomorphic interpretations.
102 Pocillopora coral colonies from the Tara Pacific expedition provide metatranscriptomic data for host and symbiont gene expression. The dataset includes raw and normalized read counts for Pocillopora and its Cladocopium photosymbiont, plus single nucleotide polymorphism (SNP) data for Cladocopium from 82 samples. It was produced by Eric Armstrong of the Centre National de la Recherche Scientifique.
Australian Triassic palynostratigraphic biozones are recalibrated to the international geologic timescale using high-precision CA-IDTIMS dating of volcanic tuffs. The dataset includes samples from Queensland, New South Wales, Tasmania, New Zealand, and Timor-Leste. It is hosted by the Australian Ocean Data Network and was last updated on 2026-06-27.
Brisbane City Council provides a dataset of creative events in Brisbane, sourced from the Trumba Calendar API. The dataset includes information on event locations, dates, times, costs, booking requirements, and venues. It is updated daily and contains a transformed extract limited to the next 2,000 events.