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DNA/RNA sequences, gene expression, protein structures, metagenomics, single-cell sequencing
27,749 datasets
NHS Digital's Out of Area Placements collection captures details of all such placements in England from NHS and independent providers. This interim collection runs for 12 months to allow changes to the long-term Mental Health Services Dataset (MHSDS). The data is provided in CSV format under the OGL-UK-3.0 license.
Ana Gamkrelidze's comparative analysis of 90 Staphylococcus aureus bacteriophages, published in 2026, examines genome heterogeneity and codon usage bias across virulent, temperate, and prophage lineages. The dataset likely contains metrics for 30 virulent phages, 30 temperate phages, and 30 intact prophages, including genome size distributions, GC content, Codon Adaptation Index (CAI), and effective number of codons (Nc).
GIS Datafile containing all layers from within the Basingstoke and Deane Local Plan 2011 - 2029. The dataset is provided by the Basingstoke and Deane Borough Council and was last updated on 2026-07-14 12:38:11.528410. It is distributed under the OGL-UK-3.0 license.
379 F7:8 recombinant inbred lines and their parental lines were genotyped using a 20K maize GBTS platform, resulting in 23,758 high-quality SNP markers. The dataset supports linkage map construction and quantitative trait locus mapping for grain protein content, as described in an associated manuscript. It was authored by Meijing Zhang and last updated on June 2, 2026.
A 2008 survey of the Carnarvon Shelf, Western Australia, conducted by the CERF Marine Biodiversity Hub aboard the RV Solander. The survey collected co-located physical and biological data across three primary study areas: Mandu, Point Cloates, and Gnaraloo. Datasets include multibeam sonar bathymetry, sediment samples, underwater video, and plankton samples for analyzing benthic biodiversity surrogates.
Data from the COLDTREE project, which aimed to identify physiological and genetic markers for winter hardiness and dormancy in woody species. The project sought to develop molecular diagnostic tools for nursery practice, addressing the challenge of scheduling the transfer of over 1.7 billion tree seedlings annually to cold storage. It was conducted by the Forestry Commission and last updated in 2026.
Experimental data from a study engineering the algal carbon-concentrating mechanism protein LCIB into tobacco plants. The dataset likely contains measurements of carbon assimilation rates, biomass accumulation, metabolite levels, and photosynthetic performance comparing engineered lines to wild-type plants. It was authored by Mirna Barsoum and last updated on June 4, 2026.
Table 2_Shotgun metagenomic and phenotypic characterization of indigenous lactic acid bacteria from raw milk artisanal cheeses: metagenomic functional insight and starter culture traits.xlsx contains data from a study by James N. Nelon, last updated in June 2026. The dataset presents results from an integrated shotgun metagenomic and culture-based analysis of five artisanal cheeses, profiling taxonomic composition, functional potential, and fermentation properties of isolated lactic acid bacteria strains.
Five artisanal raw milk cheeses were analyzed using shotgun metagenomics and culture-based methods. The study recovered 12 lactic acid bacteria isolates and identified abundant metabolic pathways linked to carbon and nitrogen metabolism. This dataset was created by James N. Nelon and shared under a CC-BY-4.0 license.
GTEx v8 data from 209 samples across five brain regions provides genome-wide co-expression analysis for SIGMAR1 and TMEM97 receptors. Drake H. Harbert performed Spearman correlations on 16,225 expressed genes, revealing divergent top networks despite shared global architecture. The dataset, last updated in 2026, includes Weighted Jaccard and Cosine similarity metrics.
Drake H. Harbert published a transcriptomic analysis comparing sigma-1 (SIGMAR1) and sigma-2 (TMEM97) receptor co-expression architectures. The dataset includes genome-wide Spearman correlation results derived from the GTEx v8 dataset, covering five brain regions with 209 samples in the primary region and 16,225 expressed genes. It was last updated on June 4, 2026.
Over 80% of colorectal cancer cases are linked to mutations in the APC gene. Alfred J. Simmons authored this research data, which details the identification of shared neoantigen epitopes from the APC gene's mutational cluster region and the development of a self-amplifying RNA vaccine candidate. The dataset, last updated on 2026-06-04, provides proof-of-concept for a vaccine approach against APC-associated colorectal cancer.
Over 80% of colorectal cancer cases are linked to mutations in the APC gene. Alfred J. Simmons used bioinformatics to identify shared neoantigen epitopes from this gene's mutational cluster region and tested a self-amplifying RNA vaccine candidate in a mouse model. The dataset, last updated in June 2026, serves as proof-of-concept for an APC-targeted cancer vaccine.
A research paper detailing the identification and in vivo testing of a shared neoantigen for colorectal cancer vaccination. The study utilized bioinformatics to identify epitopes from the mutational cluster region of the APC gene in multiple patients. It describes the development of a virus-like particle to deliver a self-amplifying RNA replicon encoding the neoantigen and presents results from in vitro T-cell assays and in vivo mouse model experiments.
A 2026 study by Alfred J. Simmons presents bioinformatics and in vivo data supporting a cancer vaccine concept. The research identifies shared neoantigen epitopes from the APC gene in colorectal cancer patients and tests a self-amplifying RNA vaccine delivered via virus-like nanoparticles. The dataset includes in vitro T-cell activation results and in vivo immune response data from mouse serum samples.
Over 80% of colorectal cancer cases are caused by mutations in the APC gene. Alfred J. Simmons used bioinformatics to identify shared neoantigen epitopes from the mutational cluster region of the APC gene in multiple patients. The dataset, last updated in June 2026, serves as proof-of-concept for a saRNA-expressed cancer vaccine against APC-associated colorectal cancer.
Longitudinal data from 248 mothers in the GUSTO cohort at 3-weeks (n=205) and 3-months (n=114) postpartum, with 71 matched cases. The dataset relates concentrations of 19 human milk oligosaccharides to maternal sociodemographic, genetic, and obstetric characteristics. It was authored by Han Zhang and shared under a CC-BY-4.0 license on figshare.
A transcriptomic dataset profiling 257 epigenetic genes, 96 metabolic genes, and 189 rate-limiting enzymes in human cholangiocarcinoma (iCCA, eCCA) and normal tissues. The data, authored by Amaya Lopez-Pascual and shared on figshare under CC-BY-4.0, includes CRISPR-Cas9 DepMap viability screens and analyses of tumor microenvironment subtypes. It was last updated on June 4, 2026.
257 epigenetic genes, 96 metabolic genes, and 189 rate-limiting enzymes were examined in transcriptomic data from intrahepatic and extrahepatic cholangiocarcinoma (CCA), normal bile ducts, organoids, and tumoroids. The dataset, created by Amaya Lopez-Pascual and last updated in June 2026, integrates CRISPR-Cas9 screening data and multi-omic profiling from mouse models. It highlights genes linked to poor prognosis and tumor microenvironment subtypes.
Amaya Lopez-Pascual's dataset contains transcriptomic profiling data for epigenetic and metabolic genes in cholangiocarcinoma (CCA). It includes expression data for 257 epigenetic genes, 96 metabolic genes, and 189 rate-limiting enzymes from human iCCA, eCCA, normal bile ducts, organoids, and tumoroids, alongside CRISPR-Cas9 DepMap data. The dataset was last updated on June 4, 2026.